Thomas, who played with the Bills from 1988-99, will have the ceremony during halftime of the team's home game against the New England Patriots on Oct. 29.
"It does make it unique knowing that I played with Bruce for 12 years and with Jim for eight years," Thomas told the team's website. "I can remember the things that they did on the football field and why they had their jerseys retired, and now I'm going to be in that same group with those guys. To be in the company of those two players is something special."
Kelly credited Thomas for his versatility in helping the Bills advance to four consecutive Super Bowl appearances.
"He was an all-purpose back," Kelly said of Thomas, who turned 52 on Wednesday. "He wasn't a guy where he'd go off tackle right and off tackle left and trap right and trap left and that was it. He brought something to the table that defenses weren't prepared for and that was him coming out of the backfield or splitting him out wide. We did some special things with him."
The Bills' all-time leading rusher (12,074 yards), Thomas was the NFL Most Valuable Player in 1991 and a five-time Pro Bowl selection before retiring in 2001. He was inducted into the Pro Football Hall of Fame in 2007.
"He led the league in yards from scrimmage four straight years and it had never been done before, not even by Jim Brown who had held the record with three," former teammate Steve Tasker said. "For certain stretches of his career not only was he the best running back in football, he was the best player at any position in football."