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Scientists accelerate evolution to produce wide array of natural compounds

"We have discovered a completely new way of doing things, one that will also teach us how to better bioengineer systems in a rational manner," researcher Barrie Wilkinson said.

By Brooks Hays

Oct. 31 (UPI) -- Scientists have found a way to trigger the evolutionary process in bacteria that yields a variety of natural compounds -- but at accelerated pace.

The bioengineering feat, dubbed Accelerated Evolution, could allow researchers to generate "libraries" of useful compounds, some of which could be adapted into new drug therapies.

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"For 20 years we have been using rational bioengineering to modify the chemical structures of clinically important natural products -- using genetics to make a new molecule in a process that parallels medicinal chemistry -- and that's what we were doing when we stumbled upon this," Barrie Wilkinson, a professor at the John Innes Centre, said in a news release. "We have discovered a completely new way of doing things, one that will also teach us how to better bioengineer systems in a rational manner."

Scientists were perfecting techniques for producing new versions of rapamycin, a compound used to treat some cancers and prevent the rejection of organs during transplants.

Rapamycin is a type of polyketide, a group of metabolites produced by bacteria and fungi to fend off pathogens and mine resources.

In an attempt to produce a new type of bacteria and new type of rapamycin, scientists installed a temperature sensitive replicon -- a self-replicating DNA or RNA molecules -- in the genome of a strain of soil bacteria called Streptomyces rapamycinicus.

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Instead of a single augmented strain of bacteria and a new version of rapamycin, their genetic manipulation yielded a variety of new bacterial strains, each producing new compounds. The scientists realized further genetic tweaking could yield an even greater variety of natural products.

Scientists believe their insertion of a replicon triggered homologous replication, a DNA repair mechanism. The repair process spit out the replicon and rearranged the genes. In other words, scientists found a way to trigger accelerated evolution.

"We think this process mimics and accelerates the processes that are prevalent during natural polyketide evolution," Wilkinson said.

Researchers believe their findings -- detailed this week in the journal Nature Communications -- could prove a game-changer in the field of drug discovery and synthetic biology.

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