Lynch ran for four touchdowns and 119 yards and threw for 160 yards and a score for the undefeated Huskies (9-0, 5-0 MAC), who matched the record 9-0 start of their 1965 team.
Cameron Stingil and Drew Hare each ran for touchdowns for the Huskies.
The Minutemen (1-8, 1-4) lost their third game in a row. Lorenzo Woodley ran for 163 yards and a touchdown while Brendon Levengood kicked four field goals.
Yosemite climber falls 30 feet, suffers major injuries
Moore to attend retreat in to avoid Kutcher's wedding