Lynch picked up 460 yards of total offense and Tommylee Lewis hauled down 10 passes for 54 yards and a score for as the Huskies, (7-0, 3-0 MAC) who improved to 7-0 for the first time since 2003.
Cameron Stingily wrapped up the victory with a late rushing touchdown.
Cooper Rush paced the Chippewas (3-5, 2-2), passing for 265 yards and two touchdowns.
One of his scoring strikes went to Titus Davis, who finished with 110 yards on five receptions.
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