Bartolo Colon (5-5) earned the victory after hurling seven-plus innings, allowing two runs on six hits and three walks with five strikeouts.
Roberto Hernandez (2-3) was saddled with the loss, giving up five runs -- four earned -- on five hits and two walks with five strikeouts.
The Phillies and Mets played a total of 57 innings in the unconventional series. Philadelphia dropped the final three games of the set and ended its 11-game homestand with a 4-7 mark.
2014: NFL Cheerleaders [PHOTOS]
Michael Sam cut from the Dallas Cowboys