The Rockies jumped off to a 6-0 lead after two innings and seemed to have the game well in hand when Wilin Rosario's two-run homer gave Colorado an 8-3 advantage in the fifth.
Jones contributed another two-run hit in the seventh as Atlanta scored four more times to put the contest away.
Cristhian Martinez (2-0) earned the win with a scoreless seventh inning and 16-year veteran Livan Hernandez collected his first career save after tossing the final 1 2/3 frames for the Braves, who clinched their three-game series at Coors Field.
Esmil Rogers (0-2) coughed up five runs over 1 1/3 innings to take the loss.
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